PoplarV1, Main, Exploration, bibRecord, 003592

Impact of an 8-year-old transgenic poplar plantation on the ectomycorrhizal fungal community.

Identifieur interne : 003592 ( Main/Exploration ); précédent : 003591; suivant : 003593

Impact of an 8-year-old transgenic poplar plantation on the ectomycorrhizal fungal community.

Auteurs : Franck O P. Stefani [Canada] ; Jean-Marc Moncalvo ; Armand Séguin ; Jean A. Bérubé ; Richard C. Hamelin

Source :

Applied and environmental microbiology [ 1098-5336 ] ; 2009.

RBID : pubmed:19801471

Descripteurs français

KwdFr :
- ADN fongique (composition chimique), ADN fongique (génétique), Analyse de séquence d'ADN (MeSH), Biodiversité (MeSH), Champignons (classification), Champignons (isolement et purification), Données de séquences moléculaires (MeSH), Espaceur de l'ADN ribosomique (composition chimique), Espaceur de l'ADN ribosomique (génétique), Microbiologie du sol (MeSH), Mycorhizes (croissance et développement), Phylogenèse (MeSH), Populus (microbiologie), Racines de plante (microbiologie), Végétaux génétiquement modifiés (microbiologie).
MESH :
- composition chimique : ADN fongique, Champignons, Espaceur de l'ADN ribosomique.
- croissance et développement : Mycorhizes.
- génétique : ADN fongique, Espaceur de l'ADN ribosomique.
- isolement et purification : Champignons.
- microbiologie : Populus, Racines de plante, Végétaux génétiquement modifiés.
- Analyse de séquence d'ADN, Biodiversité, Données de séquences moléculaires, Microbiologie du sol, Phylogenèse.

English descriptors

KwdEn :
- Biodiversity (MeSH), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal Spacer (chemistry), DNA, Ribosomal Spacer (genetics), Fungi (classification), Fungi (isolation & purification), Molecular Sequence Data (MeSH), Mycorrhizae (growth & development), Phylogeny (MeSH), Plant Roots (microbiology), Plants, Genetically Modified (microbiology), Populus (microbiology), Sequence Analysis, DNA (MeSH), Soil Microbiology (MeSH).
MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal Spacer.
- chemical , genetics : DNA, Fungal, DNA, Ribosomal Spacer.
- classification : Fungi.
- growth & development : Mycorrhizae.
- isolation & purification : Fungi.
- microbiology : Plant Roots, Plants, Genetically Modified, Populus.
- Biodiversity, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA, Soil Microbiology.

Abstract

The long-term impact of field-deployed genetically modified trees on soil mutualistic organisms is not well known. This study aimed at evaluating the impact of poplars transformed with a binary vector containing the selectable nptII marker and beta-glucuronidase reporter genes on ectomycorrhizal (EM) fungi 8 years after field deployment. We generated 2,229 fungal internal transcribed spacer (ITS) PCR products from 1,150 EM root tips and 1,079 fungal soil clones obtained from the organic and mineral soil horizons within the rhizosphere of three control and three transformed poplars. Fifty EM fungal operational taxonomic units were identified from the 1,706 EM fungal ITS amplicons retrieved. Rarefaction curves from both the root tips and soil clones were close to saturation, indicating that most of the EM species present were recovered. Based on qualitative and/or quantitative alpha- and beta-diversity measurements, statistical analyses did not reveal significant differences between EM fungal communities associated with transformed poplars and the untransformed controls. However, EM communities recovered from the root tips and soil cloning analyses differed significantly from each other. We found no evidence of difference in the EM fungal community structure linked to the long-term presence of the transgenic poplars studied, and we showed that coupling root tip analysis with a soil DNA cloning strategy is a complementary approach to better document EM fungal diversity.

DOI: 10.1128/AEM.01120-09
PubMed: 19801471
PubMed Central: PMC2786396

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 003441
to stream Main, to step Curation: 003441

Le document en format XML

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<term>DNA, Ribosomal Spacer (chemistry)</term>
<term>DNA, Ribosomal Spacer (genetics)</term>
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<term>Fungi (isolation & purification)</term>
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<term>Espaceur de l'ADN ribosomique (génétique)</term>
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<term>Phylogenèse (MeSH)</term>
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<front><div type="abstract" xml:lang="en">The long-term impact of field-deployed genetically modified trees on soil mutualistic organisms is not well known. This study aimed at evaluating the impact of poplars transformed with a binary vector containing the selectable nptII marker and beta-glucuronidase reporter genes on ectomycorrhizal (EM) fungi 8 years after field deployment. We generated 2,229 fungal internal transcribed spacer (ITS) PCR products from 1,150 EM root tips and 1,079 fungal soil clones obtained from the organic and mineral soil horizons within the rhizosphere of three control and three transformed poplars. Fifty EM fungal operational taxonomic units were identified from the 1,706 EM fungal ITS amplicons retrieved. Rarefaction curves from both the root tips and soil clones were close to saturation, indicating that most of the EM species present were recovered. Based on qualitative and/or quantitative alpha- and beta-diversity measurements, statistical analyses did not reveal significant differences between EM fungal communities associated with transformed poplars and the untransformed controls. However, EM communities recovered from the root tips and soil cloning analyses differed significantly from each other. We found no evidence of difference in the EM fungal community structure linked to the long-term presence of the transgenic poplars studied, and we showed that coupling root tip analysis with a soil DNA cloning strategy is a complementary approach to better document EM fungal diversity.</div>
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<Abstract><AbstractText>The long-term impact of field-deployed genetically modified trees on soil mutualistic organisms is not well known. This study aimed at evaluating the impact of poplars transformed with a binary vector containing the selectable nptII marker and beta-glucuronidase reporter genes on ectomycorrhizal (EM) fungi 8 years after field deployment. We generated 2,229 fungal internal transcribed spacer (ITS) PCR products from 1,150 EM root tips and 1,079 fungal soil clones obtained from the organic and mineral soil horizons within the rhizosphere of three control and three transformed poplars. Fifty EM fungal operational taxonomic units were identified from the 1,706 EM fungal ITS amplicons retrieved. Rarefaction curves from both the root tips and soil clones were close to saturation, indicating that most of the EM species present were recovered. Based on qualitative and/or quantitative alpha- and beta-diversity measurements, statistical analyses did not reveal significant differences between EM fungal communities associated with transformed poplars and the untransformed controls. However, EM communities recovered from the root tips and soil cloning analyses differed significantly from each other. We found no evidence of difference in the EM fungal community structure linked to the long-term presence of the transgenic poplars studied, and we showed that coupling root tip analysis with a soil DNA cloning strategy is a complementary approach to better document EM fungal diversity.</AbstractText>
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Impact of an 8-year-old transgenic poplar plantation on the ectomycorrhizal fungal community.

Impact of an 8-year-old transgenic poplar plantation on the ectomycorrhizal fungal community.

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